PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0113s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 245aa    MW: 27436.3 Da    PI: 5.4131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0113s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1867117155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  ++rWv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++++g
  Kalax.0113s0004.1.p  67 PVYRGVRRRN-SNRWVCEVREP---NKKNRIWLGTYPTAEMAARAHDVAALAFRG 117
                          68*****888.8******9998...3369**********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1467117IPR001471AP2/ERF domain
SMARTSM003805.1E-2568131IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2068127IPR016177DNA-binding domain
PROSITE profilePS5103222.04968125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3068127IPR001471AP2/ERF domain
PRINTSPR003671.8E-76980IPR001471AP2/ERF domain
CDDcd000185.98E-2869127No hitNo description
PRINTSPR003671.8E-791107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDVFSQYSDP LPFSSLYSQS TDPRDNSSAS DSRIGRTRSY SDEDIMLASS HPKKRAGRKK  60
FRETRHPVYR GVRRRNSNRW VCEVREPNKK NRIWLGTYPT AEMAARAHDV AALAFRGLKS  120
CLNFADSAWR LPVPASTDAA DIQRAAAEAA EMFRTSEDTD NLNKGNIVCT MGEASSGNNK  180
DEPNRQTQQG TSYYVDEEAI FDMPGLLNNM AEGLLLPPPS FLDGEFTWDN AENDTDLTLW  240
NHSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030036.16e-93PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ938e-71DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLV9PCH81e-93V9PCH8_POPEU; C-repeat binding factor 4b
STRINGPOPTR_0012s13870.17e-92(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-64C-repeat-binding factor 4